HL_5XYU_021

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

5XYU|1|A|G|953

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYU_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1195

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5XYU|1|A|G|945
5XYU|1|A|A|946
5XYU|1|A|U|947
5XYU|1|A|G|948
5XYU|1|A|C|949
5XYU|1|A|A|950
5XYU|1|A|A|951
5XYU|1|A|C|952
5XYU|1|A|G|953
5XYU|1|A|C|954

Current chains

Chain A

16S RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10