HL_5Y36_004

3D structure

PDB id

5Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.2 Å

Loop

Sequence

CGAGUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Y36_004 not in the Motif Atlas

Homologous match to HL_8KAJ_003

Geometric discrepancy: 0.5315

The information below is about HL_8KAJ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97067.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5Y36|1|B|C|86
5Y36|1|B|G|87
5Y36|1|B|A|88
5Y36|1|B|G|89
5Y36|1|B|U|90
5Y36|1|B|C|91
5Y36|1|B|G|92

Current chains

Chain B

single-guide RNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1