HL_5Y85_003
3D structure
- PDB id
- 5Y85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2 Å
Loop
- Sequence
- GUGCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5Y85|1|D|G|11
5Y85|1|D|U|12
5Y85|1|D|G|13
5Y85|1|D|C|14
5Y85|1|D|A|15
5Y85|1|D|A|16
5Y85|1|D|G|17
5Y85|1|D|U|18
5Y85|1|D|C|19
Current chains
- Chain D
- DNA/RNA (50-MER)
Nearby chains
- Chain A
- RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3')
- Chain B
- DNA/RNA (50-MER)
- Chain C
- RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3')
Coloring options: