5Y85 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5Y85_001 | 1/B/11:19 | No text annotation | ||
| HL_5Y85_002 | 1/B/28:33 | No text annotation | ||
| HL_5Y85_003 | 1/D/11:19 | T-loop with 2 stacked bulged bases HL_28252.2 | ||
| HL_5Y85_004 | 1/D/28:33 | UNCG HL_34617.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5Y85_002 | 1/A/9:10, 1/B/40:42 | Major groove platform | geometric IL_5Y85_005 IL_48076.2 | |
| IL_5Y85_003 | 1/A/13:15, 1/B/4:6 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_10289.1 | |
| IL_5Y85_005 | 1/C/9:10, 1/D/40:42 | Major groove platform IL_48076.2 | ||
| IL_5Y85_006 | 1/C/13:15, 1/D/4:6 | Isolated non-canonical cWW pair IL_10289.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5Y85_001 | No text annotation | ||
| IL_5Y85_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_5Y85_001 | 1/A/12:13, 1/B/6:7, 1/B/23:24, 1/B/37:38 | No text annotation | ||
| J4_5Y85_002 | 1/C/12:13, 1/D/6:7, 1/D/23:24, 1/D/37:38 | No text annotation |
Problematic loops
No problematic loops
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