HL_5YLZ_004
3D structure
- PDB id
- 5YLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCAUAA
- Length
- 7 nucleotides
- Bulged bases
- 5YLZ|1|D|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5YLZ_004 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.3174
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
5YLZ|1|D|U|70
5YLZ|1|D|G|71
5YLZ|1|D|C|72
5YLZ|1|D|A|73
5YLZ|1|D|U|74
5YLZ|1|D|A|75
5YLZ|1|D|A|76
Current chains
- Chain D
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- U5 spliceosomal RNA; U5 snRNA
- Chain E
- mRNA/intron lariat
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-splicing factor CWC15
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