HL_5YYN_001
3D structure
- PDB id
- 5YYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate TRNA(Arg)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAUUGGAUAG
- Length
- 11 nucleotides
- Bulged bases
- 5YYN|1|B|U|916, 5YYN|1|B|U|917, 5YYN|1|B|G|918, 5YYN|1|B|G|919, 5YYN|1|B|A|920, 5YYN|1|B|U|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5YYN_001 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.0695
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5YYN|1|B|C|913
5YYN|1|B|A|914
5YYN|1|B|A|915
5YYN|1|B|U|916
5YYN|1|B|U|917
5YYN|1|B|G|918
5YYN|1|B|G|919
5YYN|1|B|A|920
5YYN|1|B|U|921
5YYN|1|B|A|922
5YYN|1|B|G|923
Current chains
- Chain B
- TRNA
Nearby chains
- Chain A
- Arginine--tRNA ligase
Coloring options: