HL_5YYN_003

3D structure

PDB id

5YYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate TRNA(Arg)

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAUUGGAUAG

Length

11 nucleotides

Bulged bases

5YYN|1|D|U|916, 5YYN|1|D|U|917, 5YYN|1|D|G|918, 5YYN|1|D|G|919, 5YYN|1|D|A|920, 5YYN|1|D|U|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5YYN_003 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

5YYN|1|D|C|913
5YYN|1|D|A|914
5YYN|1|D|A|915
5YYN|1|D|U|916
5YYN|1|D|U|917
5YYN|1|D|G|918
5YYN|1|D|G|919
5YYN|1|D|A|920
5YYN|1|D|U|921
5YYN|1|D|A|922
5YYN|1|D|G|923

Current chains

Chain D

TRNA

Nearby chains

Chain C

Arginine--tRNA ligase