HL_5Z3G_005
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 5Z3G|1|A|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5Z3G_005 not in the Motif Atlas
- Homologous match to HL_5TBW_005
- Geometric discrepancy: 0.2277
- The information below is about HL_5TBW_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5Z3G|1|A|U|194
5Z3G|1|A|U|195
5Z3G|1|A|G|196
5Z3G|1|A|G|197
5Z3G|1|A|A|198
5Z3G|1|A|A|199
5Z3G|1|A|C|200
5Z3G|1|A|A|201
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain O
- Ribosome production factor 1
- Chain V
- Ribosome biogenesis protein NSA1
- Chain Z
- Protein MAK16
- Chain c
- 60S ribosomal protein L26-A
- Chain i
- 60S ribosomal protein L32
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