RNA 3D Hub //

5Z3G Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5Z3G_0011/A/38:45No text annotation
homologous
HL_5TBW_001
NA
HL_5Z3G_0021/A/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_5Z3G_0031/A/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_5Z3G_0041/A/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_5Z3G_0051/A/194:201T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_5Z3G_0061/A/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_5Z3G_0071/A/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_5Z3G_0081/A/278:287T-loop related
homologous
HL_8P9A_120
HL_77436.5
HL_5Z3G_0091/A/357:362GNRA
homologous
HL_8C3A_010
NA
HL_5Z3G_0101/A/382:387GNRA
homologous
HL_8C3A_011
NA
HL_5Z3G_0111/A/463:468No text annotation
geometric
HL_5TBW_044
NA
HL_5Z3G_0381/A/544:547No text annotation
HL_5Z3G_0131/A/599:604GNRA
homologous
HL_5TBW_013
NA
HL_5Z3G_0141/A/640:649Externally structured
geometric
HL_8C3A_022
NA
HL_5Z3G_0151/A/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_5Z3G_0161/A/732:737GNRA
homologous
HL_5TBW_017
NA
HL_5Z3G_0181/A/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_5Z3G_0211/A/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_5Z3G_0231/A/1346:1358No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_5Z3G_0241/A/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_5Z3G_0261/A/3018:3036No text annotation
HL_5Z3G_0391/A/3068:3073No text annotation
homologous
HL_8P9A_177
HL_65794.5
HL_5Z3G_0281/A/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_5Z3G_0291/A/3194:3197No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_5Z3G_0301/A/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_5Z3G_0311/A/3303:3311No text annotation
geometric
HL_5TBW_070
NA
HL_5Z3G_0321/B/47:56No text annotation
geometric
HL_6JXM_002
HL_31585.4
HL_5Z3G_0331/B/69:89No text annotation
homologous
HL_8C3A_230
NA
HL_5Z3G_0341/B/108:114Externally structured
geometric
HL_8C3A_022
NA
HL_5Z3G_0351/B/124:129No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_5Z3G_0361/C/11:17No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_5Z3G_0401/C/36:43No text annotation

Problematic loops

#loop idProblemSequence
HL_5Z3G_012No text annotation
HL_5Z3G_017No text annotation
HL_5Z3G_019No text annotation
HL_5Z3G_020No text annotation
HL_5Z3G_022No text annotation
HL_5Z3G_025Externally structured
HL_5Z3G_027No text annotation
HL_5Z3G_037No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5Z3G_0011/A/7:8,
1/B/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_5Z3G_0021/A/13:15,
1/B/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_5Z3G_0031/A/27:28,
1/A/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_5Z3G_0041/A/31:38,
1/A/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_5Z3G_0051/A/82:89,
1/A/97:103		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_5Z3G_0061/A/123:124,
1/A/144:149		No text annotation
homologous
IL_5TBW_007
NA
IL_5Z3G_0071/A/125:127,
1/A/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_5Z3G_0711/A/163:165,
1/A/257:258		Single stack bend
homologous
IL_8P9A_238
IL_90729.1
IL_5Z3G_0081/A/164:166,
1/A/256:257		Single stack bend
homologous
IL_5TBW_009
NA
IL_5Z3G_0671/A/169:170,
1/A/248:253		No text annotation
IL_5Z3G_0721/A/177:178,
1/A/238:241		No text annotation
IL_5Z3G_0111/A/189:191,
1/A/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_5Z3G_0121/A/272:274,
1/A/291:293		Isolated non-canonical cWW pair
geometric
IL_5MWI_002
IL_87907.2
IL_5Z3G_0131/A/337:339,
1/B/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_5Z3G_0141/A/376:379,
1/A/390:403		No text annotation
homologous
IL_5TBW_014
NA
IL_5Z3G_0151/A/404:410,
1/B/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_5Z3G_0731/A/429:431,
1/A/628:630		Isolated non-canonical cWW pair
homologous
IL_8P9A_245
IL_07785.1
IL_5Z3G_0171/A/445:449,
1/A/485:489		Triple non-canonical cWW pairs
geometric
IL_5BTM_001
IL_49751.4
IL_5Z3G_0191/A/461:463,
1/A/468:469		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_5Z3G_0201/A/512:513,
1/A/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_5Z3G_0211/A/517:525,
1/A/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_5Z3G_0221/A/531:538,
1/A/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_5Z3G_0231/A/668:670,
1/A/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_5Z3G_0241/A/680:684,
1/A/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_5Z3G_0251/A/725:728,
1/A/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_5Z3G_0261/A/752:753,
1/A/779:781		Single bulged A
geometric
IL_4V88_452
NA
IL_5Z3G_0271/A/755:758,
1/A/773:777		No text annotation
IL_5Z3G_0281/A/803:805,
1/A/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_5Z3G_0291/A/805:809,
1/A/931:938		No text annotation
homologous
IL_8P9A_256
IL_54041.2
IL_5Z3G_0301/A/954:957,
1/A/964:967		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_5Z3G_0311/A/969:972,
1/A/1109:1113		No text annotation
IL_5Z3G_0741/A/973:982,
1/A/1101:1108		No text annotation
IL_5Z3G_0331/A/983:985,
1/A/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_5Z3G_0351/A/1120:1122,
1/A/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_5Z3G_0361/A/1167:1171,
1/A/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_5Z3G_0371/A/1173:1174,
1/A/1312:1326		No text annotation
IL_5Z3G_0381/A/1207:1209,
1/A/1296:1297		No text annotation
IL_5Z3G_0391/A/1376:1378,
1/A/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_5Z3G_0401/A/1385:1387,
1/A/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_5Z3G_0411/A/1388:1395,
1/A/1415:1419		Kink-turn
homologous
IL_5TBW_059
NA
IL_5Z3G_0421/A/1398:1400,
1/A/1411:1412		Single bulged A
geometric
IL_5WWT_001
IL_31462.6
IL_5Z3G_0431/A/1444:1450,
1/A/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_5Z3G_0441/A/3004:3007,
1/A/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_5Z3G_0451/A/3012:3014,
1/A/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_5Z3G_0461/A/3047:3051,
1/A/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_5Z3G_0471/A/3054:3059,
1/A/3084:3088		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_5Z3G_0481/A/3063:3064,
1/A/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_5Z3G_0491/A/3103:3107,
1/A/3127:3131		UAA/GAN
homologous
IL_5TBW_120
NA
IL_5Z3G_0501/A/3164:3166,
1/A/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_5Z3G_0511/A/3177:3179,
1/A/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_5Z3G_0521/A/3179:3188,
1/A/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_5Z3G_0531/A/3193:3194,
1/A/3197:3199		Single bulged U
homologous
IL_5TBW_125
NA
IL_5Z3G_0541/A/3225:3229,
1/A/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_5Z3G_0551/A/3233:3235,
1/A/3252:3254		Isolated cWH basepair
geometric
IL_5F5F_001
IL_10167.6
IL_5Z3G_0561/A/3235:3238,
1/A/3249:3252		Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_5Z3G_0571/A/3300:3303,
1/A/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_5Z3G_0581/A/3318:3320,
1/A/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_5Z3G_0591/A/3324:3325,
1/A/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_5Z3G_0601/A/3328:3331,
1/A/3372:3378		No text annotation
IL_5Z3G_0751/A/3332:3337,
1/A/3367:3371		No text annotation
homologous
IL_8CRE_139
IL_70411.2
IL_5Z3G_0621/B/64:66,
1/B/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_5Z3G_0631/B/68:69,
1/B/89:91		Single bulged U
geometric
IL_5TBW_146
NA
IL_5Z3G_0761/C/26:27,
1/C/51:54		No text annotation
IL_5Z3G_0771/C/30:34,
1/C/45:48		No text annotation

Problematic loops

#loop idProblemSequence
IL_5Z3G_065Triple non-canonical cWW pairs
IL_5Z3G_066No text annotation
IL_5Z3G_009No text annotation
IL_5Z3G_010Major groove platform with extra pair
IL_5Z3G_016Tandem non-canonical cWW pairs
IL_5Z3G_018No text annotation
IL_5Z3G_068No text annotation
IL_5Z3G_032No text annotation
IL_5Z3G_034Major groove intercalation
IL_5Z3G_069Isolated non-canonical cWW pair
IL_5Z3G_070UAA/GAN with extra cWW
IL_5Z3G_061No text annotation
IL_5Z3G_064No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5Z3G_0051/A/340:356,
1/A/363:368,
1/B/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_5Z3G_0011/A/369:376,
1/A/403:404,
1/B/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_5Z3G_0061/A/436:442,
1/A/492:495,
1/A/618:623		No text annotation
J3_5Z3G_0021/A/502:503,
1/A/588:597,
1/A/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_5Z3G_0031/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_5Z3G_0041/B/44:45,
1/B/58:64,
1/B/96:100		No text annotation
homologous
J3_8P4V_024
NA
J4_5Z3G_0011/A/185:189,
1/A/205:208,
1/A/212:214,
1/A/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_5Z3G_0021/A/3010:3012,
1/A/3042:3043,
1/A/3098:3100,
1/A/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_5Z3G_0011/A/20:22,
1/B/35:42,
1/B/102:107,
1/B/115:116,
1/B/137:139		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_5Z3G_0051/A/112:123,
1/A/149:158,
1/A/263:272,
1/A/293:300,
1/A/315:319		No text annotation
J5_5Z3G_0061/A/112:124,
1/A/144:158,
1/A/263:272,
1/A/293:300,
1/A/315:319		No text annotation
J5_5Z3G_0041/A/658:663,
1/A/799:802,
1/A/941:944,
1/A/1375:1376,
1/A/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J6_5Z3G_0011/A/22:27,
1/A/58:68,
1/A/75:79,
1/A/106:110,
1/A/321:331,
1/B/32:35		No text annotation
J7_5Z3G_0011/A/949:954,
1/A/967:968,
1/A/1114:1117,
1/A/1141:1146,
1/A/1157:1161,
1/A/1338:1339,
1/A/1365:1370		No text annotation
J7_5Z3G_0021/A/949:957,
1/A/964:968,
1/A/1114:1117,
1/A/1141:1146,
1/A/1157:1161,
1/A/1338:1339,
1/A/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J5_5Z3G_002No text annotation
J5_5Z3G_003No text annotation

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