HL_5Z3G_010

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_010 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.3578

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5Z3G|1|A|U|382
5Z3G|1|A|G|383
5Z3G|1|A|A|384
5Z3G|1|A|A|385
5Z3G|1|A|A|386
5Z3G|1|A|A|387

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L17-A

Chain d

Unassigned