HL_5Z3G_023
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- GUUGAUAUGAUGC
- Length
- 13 nucleotides
- Bulged bases
- 5Z3G|1|A|G|1349, 5Z3G|1|A|A|1352, 5Z3G|1|A|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5Z3G_023 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3261
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5Z3G|1|A|G|1346
5Z3G|1|A|U|1347
5Z3G|1|A|U|1348
5Z3G|1|A|G|1349
5Z3G|1|A|A|1350
5Z3G|1|A|U|1351
5Z3G|1|A|A|1352
5Z3G|1|A|U|1353
5Z3G|1|A|G|1354
5Z3G|1|A|A|1355
5Z3G|1|A|U|1356
5Z3G|1|A|G|1357
5Z3G|1|A|C|1358
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain I
- 60S ribosomal protein L6-A
- Chain J
- 60S ribosomal protein L7-A
- Chain U
- 60S ribosomal protein L18-A
- Chain X
- Ribosomal RNA-processing protein 1
- Chain Z
- Protein MAK16
- Chain i
- 60S ribosomal protein L32
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