HL_5Z3G_028

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5Z3G|1|A|G|3116, 5Z3G|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_028 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1822

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5Z3G|1|A|C|3110
5Z3G|1|A|U|3111
5Z3G|1|A|G|3112
5Z3G|1|A|A|3113
5Z3G|1|A|A|3114
5Z3G|1|A|C|3115
5Z3G|1|A|G|3116
5Z3G|1|A|C|3117
5Z3G|1|A|C|3118
5Z3G|1|A|U|3119
5Z3G|1|A|C|3120
5Z3G|1|A|U|3121
5Z3G|1|A|A|3122
5Z3G|1|A|A|3123
5Z3G|1|A|G|3124

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain S

60S ribosomal protein L16-A