HL_5Z56_003
3D structure
- PDB id
- 5Z56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 5Z56|1|F|C|68
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5Z56_003 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.2971
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
5Z56|1|F|U|64
5Z56|1|F|G|65
5Z56|1|F|C|66
5Z56|1|F|G|67
5Z56|1|F|C|68
5Z56|1|F|A|69
5Z56|1|F|A|70
Current chains
- Chain F
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain B
- U5 spliceosomal RNA; U5 snRNA
- Chain G
- pre-mRNA
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- Skip
- Chain T
- Pleiotropic regulator 1
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