HL_5ZEB_007

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

5ZEB|1|A|U|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_007 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.2517

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

5ZEB|1|A|C|224
5ZEB|1|A|A|225
5ZEB|1|A|A|226
5ZEB|1|A|A|227
5ZEB|1|A|A|228
5ZEB|1|A|U|229
5ZEB|1|A|G|230

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15