HL_5ZEB_013

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

5ZEB|1|A|G|411, 5ZEB|1|A|A|412, 5ZEB|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1089

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5ZEB|1|A|G|409
5ZEB|1|A|U|410
5ZEB|1|A|G|411
5ZEB|1|A|A|412
5ZEB|1|A|G|413
5ZEB|1|A|A|414
5ZEB|1|A|G|415
5ZEB|1|A|C|416
5ZEB|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24