HL_5ZEB_057

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

5ZEB|1|A|A|2492, 5ZEB|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1039

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5ZEB|1|A|C|2488
5ZEB|1|A|U|2489
5ZEB|1|A|A|2490
5ZEB|1|A|A|2491
5ZEB|1|A|A|2492
5ZEB|1|A|A|2493
5ZEB|1|A|U|2494
5ZEB|1|A|G|2495
5ZEB|1|A|U|2496
5ZEB|1|A|A|2497
5ZEB|1|A|A|2498
5ZEB|1|A|C|2499
5ZEB|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27