HL_5ZEB_058

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACGGCAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_058 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1802

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5ZEB|1|A|G|2527
5ZEB|1|A|G|2528
5ZEB|1|A|A|2529
5ZEB|1|A|C|2530
5ZEB|1|A|G|2531
5ZEB|1|A|G|2532
5ZEB|1|A|C|2533
5ZEB|1|A|A|2534
5ZEB|1|A|A|2535
5ZEB|1|A|U|2536
5ZEB|1|A|C|2537

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5