HL_5ZEB_064

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

5ZEB|1|A|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_064 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1206

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5ZEB|1|A|U|2752
5ZEB|1|A|G|2753
5ZEB|1|A|G|2754
5ZEB|1|A|A|2755
5ZEB|1|A|G|2756
5ZEB|1|A|C|2757
5ZEB|1|A|A|2758
5ZEB|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

50S ribosomal protein L6