HL_5ZEB_080

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUGAUGGC

Length

9 nucleotides

Bulged bases

5ZEB|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_080 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.136

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5ZEB|1|a|G|259
5ZEB|1|a|G|260
5ZEB|1|a|U|261
5ZEB|1|a|G|262
5ZEB|1|a|A|263
5ZEB|1|a|U|264
5ZEB|1|a|G|265
5ZEB|1|a|G|266
5ZEB|1|a|C|267

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20