HL_5ZEB_086

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_086 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1605

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5ZEB|1|a|C|454
5ZEB|1|a|G|455
5ZEB|1|a|C|456
5ZEB|1|a|A|457
5ZEB|1|a|A|458
5ZEB|1|a|G|459

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16