HL_5ZEP_006

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5ZEP|1|A|A|195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0887

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5ZEP|1|A|G|193
5ZEP|1|A|A|194
5ZEP|1|A|A|195
5ZEP|1|A|A|196
5ZEP|1|A|C|197
5ZEP|1|A|A|198
5ZEP|1|A|U|199
5ZEP|1|A|C|200

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28