HL_5ZEP_014
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGCCCGUGGAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5ZEP|1|A|G|474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ZEP_014 not in the Motif Atlas
- Homologous match to HL_4WF9_013
- Geometric discrepancy: 0.2034
- The information below is about HL_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69139.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5ZEP|1|A|G|469
5ZEP|1|A|G|470
5ZEP|1|A|C|471
5ZEP|1|A|C|472
5ZEP|1|A|C|473
5ZEP|1|A|G|474
5ZEP|1|A|U|475
5ZEP|1|A|G|476
5ZEP|1|A|G|477
5ZEP|1|A|A|478
5ZEP|1|A|A|479
5ZEP|1|A|U|480
5ZEP|1|A|C|481
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L28
- Chain w
- Transfer RNA; tRNA
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