HL_5ZEP_028

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

5ZEP|1|A|U|1075, 5ZEP|1|A|G|1078

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_028 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1656

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5ZEP|1|A|G|1072
5ZEP|1|A|G|1073
5ZEP|1|A|A|1074
5ZEP|1|A|U|1075
5ZEP|1|A|A|1076
5ZEP|1|A|A|1077
5ZEP|1|A|G|1078
5ZEP|1|A|C|1079

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Uncharacterized protein

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27