HL_5ZEP_038

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUUCGGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_038 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.383

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5ZEP|1|A|C|1581
5ZEP|1|A|C|1582
5ZEP|1|A|U|1583
5ZEP|1|A|U|1584
5ZEP|1|A|U|1585
5ZEP|1|A|C|1586
5ZEP|1|A|G|1587
5ZEP|1|A|G|1588
5ZEP|1|A|G|1589
5ZEP|1|A|G|1590

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

bS1