HL_5ZEP_051

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5ZEP|1|A|A|2137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_051 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1966

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5ZEP|1|A|G|2134
5ZEP|1|A|U|2135
5ZEP|1|A|A|2136
5ZEP|1|A|A|2137
5ZEP|1|A|C|2138
5ZEP|1|A|U|2139
5ZEP|1|A|A|2140
5ZEP|1|A|U|2141
5ZEP|1|A|A|2142
5ZEP|1|A|A|2143
5ZEP|1|A|C|2144

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Ribosome hibernation promoting factor