HL_5ZEP_057

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

5ZEP|1|A|A|2492, 5ZEP|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1039

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5ZEP|1|A|C|2488
5ZEP|1|A|U|2489
5ZEP|1|A|A|2490
5ZEP|1|A|A|2491
5ZEP|1|A|A|2492
5ZEP|1|A|A|2493
5ZEP|1|A|U|2494
5ZEP|1|A|G|2495
5ZEP|1|A|U|2496
5ZEP|1|A|A|2497
5ZEP|1|A|A|2498
5ZEP|1|A|C|2499
5ZEP|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27