HL_5ZEP_072

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_072 not in the Motif Atlas

Homologous match to HL_5J7L_202

Geometric discrepancy: 0.1416

The information below is about HL_5J7L_202

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5ZEP|1|A|A|3077
5ZEP|1|A|G|3078
5ZEP|1|A|U|3079
5ZEP|1|A|A|3080
5ZEP|1|A|A|3081
5ZEP|1|A|U|3082

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L19