HL_5ZEP_104
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUCAGCAACGC
- Length
- 12 nucleotides
- Bulged bases
- 5ZEP|1|a|A|1345, 5ZEP|1|a|C|1347
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ZEP_104 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0816
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5ZEP|1|a|G|1338
5ZEP|1|a|A|1339
5ZEP|1|a|U|1340
5ZEP|1|a|C|1341
5ZEP|1|a|A|1342
5ZEP|1|a|G|1343
5ZEP|1|a|C|1344
5ZEP|1|a|A|1345
5ZEP|1|a|A|1346
5ZEP|1|a|C|1347
5ZEP|1|a|G|1348
5ZEP|1|a|C|1349
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
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