HL_5ZEP_108
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ZEP_108 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.4005
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5ZEP|1|w|G|31
5ZEP|1|w|G|32
5ZEP|1|w|C|33
5ZEP|1|w|U|34
5ZEP|1|w|C|35
5ZEP|1|w|A|36
5ZEP|1|w|U|37
5ZEP|1|w|A|38
5ZEP|1|w|A|39
5ZEP|1|w|C|40
5ZEP|1|w|C|41
Current chains
- Chain w
- E-tRNAfMet
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain x
- Ribosome hibernation promoting factor
Coloring options: