HL_5ZET_006

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5ZET|1|A|A|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0888

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5ZET|1|A|G|193
5ZET|1|A|A|194
5ZET|1|A|A|195
5ZET|1|A|A|196
5ZET|1|A|C|197
5ZET|1|A|A|198
5ZET|1|A|U|199
5ZET|1|A|C|200

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28