HL_5ZET_015

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5ZET|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_015 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.111

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5ZET|1|A|G|498
5ZET|1|A|G|499
5ZET|1|A|A|500
5ZET|1|A|C|501
5ZET|1|A|C|502
5ZET|1|A|A|503
5ZET|1|A|C|504
5ZET|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15