HL_5ZET_077

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACGGCAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_077 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.1968

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5ZET|1|A|G|2528
5ZET|1|A|A|2529
5ZET|1|A|C|2530
5ZET|1|A|G|2531
5ZET|1|A|G|2532
5ZET|1|A|C|2533
5ZET|1|A|A|2534
5ZET|1|A|A|2535
5ZET|1|A|U|2536

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5