HL_5ZEY_008

3D structure

PDB id

5ZEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis Trans-translation state 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12.5 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

5ZEY|1|B|C|16, 5ZEY|1|B|C|17, 5ZEY|1|B|U|18, 5ZEY|1|B|G|19, 5ZEY|1|B|G|20, 5ZEY|1|B|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEY_008 not in the Motif Atlas

Homologous match to HL_6ORD_220

Geometric discrepancy: 0.4662

The information below is about HL_6ORD_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5ZEY|1|B|G|12
5ZEY|1|B|C|13
5ZEY|1|B|A|14
5ZEY|1|B|G|15
5ZEY|1|B|C|16
5ZEY|1|B|C|17
5ZEY|1|B|U|18
5ZEY|1|B|G|19
5ZEY|1|B|G|20
5ZEY|1|B|U|21
5ZEY|1|B|A|22
5ZEY|1|B|G|23
5ZEY|1|B|C|24

Current chains

Chain B

A-tRNAfMet

Nearby chains

Chain A

Transfer-messenger RNA; tmRNA

Chain C

SsrA-binding protein