HL_5ZLU_003

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_003 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.2432

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5ZLU|1|DD|G|54
5ZLU|1|DD|5MU|55
5ZLU|1|DD|PSU|56
5ZLU|1|DD|C|57
5ZLU|1|DD|A|58
5ZLU|1|DD|A|59
5ZLU|1|DD|A|60
5ZLU|1|DD|U|61
5ZLU|1|DD|C|62

Current chains

Chain DD

P-site tRNA

Nearby chains

Chain EE

Macrolide efflux protein

Chain c

50S ribosomal protein L5