5ZLU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5ZLU_001 | 1/DD/13:23 | No text annotation | homologous HL_7YSE_001 NA | |
| HL_5ZLU_002 | 1/DD/32:40 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.7 | |
| HL_5ZLU_003 | 1/DD/54:62 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.9 | |
| HL_5ZLU_133 | 1/G/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_5ZLU_005 | 1/G/79:90 | No text annotation | ||
| HL_5ZLU_006 | 1/G/158:163 | GNRA | geometric HL_5TBW_019 NA | |
| HL_5ZLU_104 | 1/G/186:191 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_5ZLU_008 | 1/G/201:216 | No text annotation | ||
| HL_5ZLU_009 | 1/G/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_5ZLU_010 | 1/G/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_5ZLU_011 | 1/G/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_5ZLU_012 | 1/G/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_5ZLU_013 | 1/G/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_5ZLU_014 | 1/G/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_5ZLU_015 | 1/G/458:474 | GNRA | homologous HL_6CZR_083 NA | |
| HL_5ZLU_106 | 1/G/507:524 | No text annotation | ||
| HL_5ZLU_016 | 1/G/522:527 | GNRA variation | geometric HL_1MFQ_001 HL_37824.8 | |
| HL_5ZLU_017 | 1/G/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_5ZLU_107 | 1/G/683:707 | No text annotation | ||
| HL_5ZLU_018 | 1/G/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_5ZLU_019 | 1/G/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_5ZLU_020 | 1/G/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_5ZLU_021 | 1/G/836:850 | No text annotation | ||
| HL_5ZLU_022 | 1/G/862:867 | GNRA | homologous HL_6CZR_090 NA | |
| HL_5ZLU_023 | 1/G/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_5ZLU_024 | 1/G/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_5ZLU_109 | 1/G/1008:1021 | No text annotation | homologous HL_5J7L_022 NA | |
| HL_5ZLU_026 | 1/G/1027:1034 | No text annotation | ||
| HL_5ZLU_027 | 1/G/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_5ZLU_028 | 1/G/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5ZLU_029 | 1/G/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_5ZLU_030 | 1/G/1162:1174 | No text annotation | ||
| HL_5ZLU_031 | 1/G/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_5ZLU_032 | 1/G/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_5ZLU_033 | 1/G/1356:1366 | No text annotation | ||
| HL_5ZLU_034 | 1/G/1449:1454 | UNCG | geometric HL_5J7L_030 HL_34617.5 | |
| HL_5ZLU_035 | 1/G/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5ZLU_036 | 1/V/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5ZLU_037 | 1/V/87:95 | No text annotation | geometric HL_7RQB_002 NA | |
| HL_5ZLU_038 | 1/V/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_5ZLU_112 | 1/V/134:145 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
| HL_5ZLU_039 | 1/V/136:143 | No text annotation | ||
| HL_5ZLU_040 | 1/V/153:173 | No text annotation | homologous HL_7RQB_005 NA | |
| HL_5ZLU_113 | 1/V/188:208 | No text annotation | ||
| HL_5ZLU_041 | 1/V/194:201 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_5ZLU_042 | 1/V/224:231 | No text annotation | geometric HL_6CF2_001 HL_87553.1 | |
| HL_5ZLU_043 | 1/V/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_5ZLU_134 | 1/V/270J:270P | No text annotation | ||
| HL_5ZLU_114 | 1/V/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_5ZLU_046 | 1/V/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_5ZLU_047 | 1/V/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_5ZLU_048 | 1/V/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_5ZLU_049 | 1/V/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_5ZLU_050 | 1/V/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_5ZLU_115 | 1/V/481:509 | No text annotation | ||
| HL_5ZLU_051 | 1/V/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.8 | |
| HL_5ZLU_052 | 1/V/544:549 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_5ZLU_053 | 1/V/566:575 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_018 HL_28252.9 | |
| HL_5ZLU_054 | 1/V/629:635 | GNRA | homologous HL_7A0S_020 HL_37824.8 | |
| HL_5ZLU_055 | 1/V/640:648 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_5ZLU_056 | 1/V/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5ZLU_057 | 1/V/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5ZLU_058 | 1/V/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_5ZLU_059 | 1/V/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5ZLU_060 | 1/V/880:897 | No text annotation | homologous HL_5J7L_158 NA | |
| HL_5ZLU_116 | 1/V/952:965 | No text annotation | ||
| HL_5ZLU_061 | 1/V/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5ZLU_062 | 1/V/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5ZLU_063 | 1/V/1064:1074 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_5ZLU_064 | 1/V/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_5ZLU_117 | 1/V/1167:1182 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_5ZLU_065 | 1/V/1170:1179 | No text annotation | ||
| HL_5ZLU_066 | 1/V/1221:1228 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_5ZLU_067 | 1/V/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.9 | |
| HL_5ZLU_118 | 1/V/1319:1333 | No text annotation | ||
| HL_5ZLU_068 | 1/V/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_5ZLU_119 | 1/V/1357:1374 | No text annotation | ||
| HL_5ZLU_069 | 1/V/1362:1369 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_5ZLU_120 | 1/V/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_5ZLU_071 | 1/V/1448:1463 | No text annotation | ||
| HL_5ZLU_072 | 1/V/1491:1499 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_5ZLU_073 | 1/V/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5ZLU_074 | 1/V/1629:1637 | No text annotation | ||
| HL_5ZLU_122 | 1/V/1686:1702 | No text annotation | ||
| HL_5ZLU_075 | 1/V/1691:1696 | UNCG | homologous HL_7A0S_042 HL_34617.5 | |
| HL_5ZLU_123 | 1/V/1708:1750 | No text annotation | ||
| HL_5ZLU_076 | 1/V/1725:1735 | No text annotation | ||
| HL_5ZLU_077 | 1/V/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5ZLU_135 | 1/V/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_5ZLU_078 | 1/V/1778:1787 | No text annotation | ||
| HL_5ZLU_079 | 1/V/1806:1811 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_5ZLU_125 | 1/V/1856:1886 | No text annotation | ||
| HL_5ZLU_080 | 1/V/1863:1879 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_5ZLU_081 | 1/V/1909:1921 | No text annotation | geometric HL_8P9A_160 HL_70658.1 | |
| HL_5ZLU_082 | 1/V/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_5ZLU_083 | 1/V/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5ZLU_084 | 1/V/2143:2148 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_5ZLU_085 | 1/V/2209:2215 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_5ZLU_086 | 1/V/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_5ZLU_087 | 1/V/2264:2276 | No text annotation | homologous HL_7A0S_053 HL_91939.2 | |
| HL_5ZLU_088 | 1/V/2303:2313 | No text annotation | homologous HL_4WF9_051 NA | |
| HL_5ZLU_089 | 1/V/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5ZLU_128 | 1/V/2354:2363 | No text annotation | geometric HL_5J7L_212 HL_75293.5 | |
| HL_5ZLU_090 | 1/V/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5ZLU_091 | 1/V/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_5ZLU_129 | 1/V/2401:2415 | No text annotation | ||
| HL_5ZLU_092 | 1/V/2404:2413 | No text annotation | homologous HL_4WF9_055 HL_53454.2 | |
| HL_5ZLU_093 | 1/V/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_5ZLU_094 | 1/V/2528:2535 | GNRA variation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_5ZLU_095 | 1/V/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_5ZLU_096 | 1/V/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.8 | |
| HL_5ZLU_097 | 1/V/2658:2663 | GNRA | homologous HL_4WF9_060 HL_37824.8 | |
| HL_5ZLU_098 | 1/V/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5ZLU_099 | 1/V/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5ZLU_100 | 1/V/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5ZLU_101 | 1/V/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_5ZLU_136 | 1/X/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_5ZLU_103 | 1/X/86:90 | GNRA | homologous HL_4V9F_072 HL_37824.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5ZLU_004 | No text annotation | ||
| HL_5ZLU_007 | No text annotation | ||
| HL_5ZLU_105 | No text annotation | ||
| HL_5ZLU_108 | GNRA with extra near cWW | ||
| HL_5ZLU_025 | No text annotation | ||
| HL_5ZLU_110 | No text annotation | ||
| HL_5ZLU_111 | No text annotation | ||
| HL_5ZLU_044 | No text annotation | ||
| HL_5ZLU_045 | No text annotation | ||
| HL_5ZLU_070 | No text annotation | ||
| HL_5ZLU_121 | No text annotation | ||
| HL_5ZLU_124 | No text annotation | ||
| HL_5ZLU_126 | No text annotation | ||
| HL_5ZLU_127 | No text annotation | ||
| HL_5ZLU_130 | No text annotation | ||
| HL_5ZLU_131 | tRNA anticodon loop | ||
| HL_5ZLU_132 | No text annotation | ||
| HL_5ZLU_102 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5ZLU_001 | 1/DD/28:29, 1/DD/43:45 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_5ZLU_002 | 1/G/30:32, 1/G/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_5ZLU_003 | 1/G/44:45, 1/G/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_5ZLU_004 | 1/G/47:54, 1/G/357:361 | No text annotation | ||
| IL_5ZLU_005 | 1/G/54:56, 1/G/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_5ZLU_006 | 1/G/63:66, 1/G/103:104 | Multiple bulged bases | geometric IL_4LFB_005 IL_82107.5 | |
| IL_5ZLU_203 | 1/G/63:76, 1/G/93:104 | No text annotation | ||
| IL_5ZLU_007 | 1/G/66:76, 1/G/93:103 | No text annotation | ||
| IL_5ZLU_008 | 1/G/128:131, 1/G/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_5ZLU_009 | 1/G/132:136, 1/G/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5ZLU_010 | 1/G/148:154, 1/G/168:174 | No text annotation | ||
| IL_5ZLU_204 | 1/G/154:155, 1/G/166:168 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_5ZLU_205 | 1/G/186:186C, 1/G/191D:191 | No text annotation | geometric IL_1CSL_001 IL_25872.4 | |
| IL_5ZLU_014 | 1/G/242:247, 1/G/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_5ZLU_206 | 1/G/249:252, 1/G/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_5ZLU_016 | 1/G/292:293, 1/G/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5ZLU_207 | 1/G/292:295, 1/G/302:308 | No text annotation | ||
| IL_5ZLU_017 | 1/G/367:369, 1/G/392:393 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_5ZLU_018 | 1/G/371:375, 1/G/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_5ZLU_208 | 1/G/371:378, 1/G/385:390 | No text annotation | ||
| IL_5ZLU_019 | 1/G/375:376, 1/G/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_5ZLU_020 | 1/G/376:378, 1/G/386:387 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_5ZLU_021 | 1/G/378:379, 1/G/384:386 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_5ZLU_022 | 1/G/409:416, 1/G/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_5ZLU_023 | 1/G/446:450, 1/G/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_5ZLU_024 | 1/G/450:455, 1/G/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_5ZLU_025 | 1/G/504:511, 1/G/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_5ZLU_165 | 1/G/504:505, 1/G/526:541 | No text annotation | ||
| IL_5ZLU_026 | 1/G/514:521, 1/G/528:537 | No text annotation | ||
| IL_5ZLU_027 | 1/G/569:575, 1/G/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_5ZLU_028 | 1/G/580:584, 1/G/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_5ZLU_029 | 1/G/594:596, 1/G/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_5ZLU_209 | 1/G/597:598, 1/G/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_5ZLU_210 | 1/G/605:612, 1/G/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_5ZLU_032 | 1/G/654:658, 1/G/747:754 | No text annotation | ||
| IL_5ZLU_033 | 1/G/659:661, 1/G/745:746 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_5ZLU_034 | 1/G/661:666, 1/G/740:745 | No text annotation | ||
| IL_5ZLU_035 | 1/G/666:671, 1/G/736:740 | No text annotation | ||
| IL_5ZLU_211 | 1/G/673:680, 1/G/711:717 | No text annotation | ||
| IL_5ZLU_037 | 1/G/681:682, 1/G/708:710 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_5ZLU_038 | 1/G/683:689, 1/G/698:707 | No text annotation | ||
| IL_5ZLU_039 | 1/G/774:783, 1/G/799:805 | No text annotation | ||
| IL_5ZLU_212 | 1/G/887:894, 1/G/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_6CZR_364 NA | |
| IL_5ZLU_041 | 1/G/922:923, 1/G/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_5ZLU_042 | 1/G/925:927, 1/G/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_5ZLU_043 | 1/G/933:935, 1/G/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_5ZLU_044 | 1/G/953:954, 1/G/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_5ZLU_045 | 1/G/1048:1050, 1/G/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_5ZLU_213 | 1/G/1052:1056, 1/G/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_5ZLU_047 | 1/G/1057:1058, 1/G/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_5ZLU_214 | 1/G/1060:1061, 1/G/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_5ZLU_049 | 1/G/1124:1128, 1/G/1143:1149 | No text annotation | homologous IL_4LFB_048 IL_85222.1 | |
| IL_5ZLU_050 | 1/G/1128:1133, 1/G/1141:1143 | No text annotation | ||
| IL_5ZLU_051 | 1/G/1158:1162, 1/G/1174:1181 | No text annotation | ||
| IL_5ZLU_171 | 1/G/1247:1253, 1/G/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_5ZLU_053 | 1/G/1255:1258, 1/G/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_5ZLU_172 | 1/G/1259:1260, 1/G/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_5ZLU_055 | 1/G/1260:1263, 1/G/1272:1274 | Minor groove platform with extra cWW | geometric IL_4V88_411 NA | |
| IL_5ZLU_056 | 1/G/1303:1311, 1/G/1326:1334 | No text annotation | ||
| IL_5ZLU_057 | 1/G/1399:1401, 1/G/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_5ZLU_058 | 1/G/1401:1404, 1/G/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5ZLU_173 | 1/G/1401:1407, 1/G/1494:1501 | No text annotation | ||
| IL_5ZLU_059 | 1/G/1405:1407, 1/G/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_5ZLU_060 | 1/G/1407:1409, 1/G/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_5ZLU_215 | 1/G/1407:1420, 1/G/1480:1494 | No text annotation | ||
| IL_5ZLU_061 | 1/G/1410:1412, 1/G/1489:1490 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_5ZLU_062 | 1/G/1431:1435, 1/G/1466:1469 | UAA/GAN variation | geometric IL_6CZR_170 NA | |
| IL_5ZLU_175 | 1/G/1431:1437, 1/G/1464:1469 | No text annotation | ||
| IL_5ZLU_063 | 1/G/1435:1437, 1/G/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_5ZLU_216 | 1/G/1440:1447, 1/G/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_5ZLU_065 | 1/V/24:30, 1/V/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_5ZLU_066 | 1/V/36:37, 1/V/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
| IL_5ZLU_067 | 1/V/40:44, 1/V/434:439 | No text annotation | ||
| IL_5ZLU_217 | 1/V/81:86, 1/V/96:105 | No text annotation | ||
| IL_5ZLU_069 | 1/V/183:184, 1/V/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_5ZLU_070 | 1/V/188:194, 1/V/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_5ZLU_071 | 1/V/239:245, 1/V/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5ZLU_072 | 1/V/288:291, 1/V/349:353 | No text annotation | ||
| IL_5ZLU_073 | 1/V/291:295, 1/V/343:349 | No text annotation | ||
| IL_5ZLU_074 | 1/V/481:484, 1/V/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_5ZLU_075 | 1/V/564:566, 1/V/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_5ZLU_180 | 1/V/601:629, 1/V/635:656 | No text annotation | ||
| IL_5ZLU_076 | 1/V/672:674, 1/V/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_5ZLU_077 | 1/V/674:678, 1/V/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_5ZLU_078 | 1/V/697:698, 1/V/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.7 | |
| IL_5ZLU_079 | 1/V/701:707, 1/V/724:731 | No text annotation | ||
| IL_5ZLU_080 | 1/V/738:741, 1/V/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_5ZLU_081 | 1/V/837:838, 1/V/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_5ZLU_082 | 1/V/844:850, 1/V/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5ZLU_182 | 1/V/844:862, 1/V/915:934 | No text annotation | ||
| IL_5ZLU_083 | 1/V/857:862, 1/V/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_5ZLU_218 | 1/V/862:868, 1/V/909:915 | No text annotation | ||
| IL_5ZLU_085 | 1/V/870:874, 1/V/904:907 | No text annotation | ||
| IL_5ZLU_086 | 1/V/875:880, 1/V/897:903 | No text annotation | ||
| IL_5ZLU_087 | 1/V/952:954, 1/V/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_5ZLU_219 | 1/V/994:996, 1/V/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_5ZLU_183 | 1/V/996:1011, 1/V/1150:1159 | No text annotation | ||
| IL_5ZLU_089 | 1/V/997:1002, 1/V/1153:1158 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_5ZLU_090 | 1/V/1004:1011, 1/V/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_5ZLU_091 | 1/V/1011:1013, 1/V/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_5ZLU_092 | 1/V/1018:1030, 1/V/1124:1144 | No text annotation | ||
| IL_5ZLU_093 | 1/V/1031:1034, 1/V/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_5ZLU_094 | 1/V/1043:1053, 1/V/1107:1112 | No text annotation | ||
| IL_5ZLU_095 | 1/V/1087:1091, 1/V/1100:1102 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_5ZLU_096 | 1/V/1166:1168, 1/V/1180:1183 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_5ZLU_097 | 1/V/1168:1170, 1/V/1179:1180 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_5ZLU_098 | 1/V/1202:1207, 1/V/1239:1243 | No text annotation | ||
| IL_5ZLU_099 | 1/V/1208:1215, 1/V/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5ZLU_100 | 1/V/1219:1221, 1/V/1228:1230 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_5ZLU_101 | 1/V/1319:1324, 1/V/1330:1333 | No text annotation | ||
| IL_5ZLU_102 | 1/V/1351:1355, 1/V/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5ZLU_103 | 1/V/1357:1361, 1/V/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_5ZLU_104 | 1/V/1415:1423, 1/V/1574:1587 | No text annotation | ||
| IL_5ZLU_186 | 1/V/1423:1429, 1/V/1564:1574 | No text annotation | ||
| IL_5ZLU_220 | 1/V/1433:1435, 1/V/1557:1560 | No text annotation | homologous IL_9DFE_055 IL_67095.2 | |
| IL_5ZLU_106 | 1/V/1437:1440, 1/V/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5ZLU_188 | 1/V/1478:1483, 1/V/1506:1515 | No text annotation | ||
| IL_5ZLU_107 | 1/V/1489:1491, 1/V/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_5ZLU_108 | 1/V/1651:1656, 1/V/2004:2006 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
| IL_5ZLU_109 | 1/V/1663:1665, 1/V/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_5ZLU_110 | 1/V/1666:1674, 1/V/1990:1994 | No text annotation | homologous IL_7A0S_109 IL_22854.4 | |
| IL_5ZLU_111 | 1/V/1686:1691, 1/V/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_5ZLU_112 | 1/V/1710:1725, 1/V/1735:1748 | No text annotation | ||
| IL_5ZLU_113 | 1/V/1770:1771, 1/V/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_31462.7 | |
| IL_5ZLU_114 | 1/V/1776:1778, 1/V/1787:1788 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_5ZLU_115 | 1/V/1798:1804, 1/V/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5ZLU_116 | 1/V/1837:1840, 1/V/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_5ZLU_117 | 1/V/1841:1842, 1/V/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.5 | |
| IL_5ZLU_118 | 1/V/1846:1849, 1/V/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_5ZLU_221 | 1/V/1851:1855, 1/V/1887:1891 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.2 | |
| IL_5ZLU_120 | 1/V/1856:1860, 1/V/1882:1886 | Triple sheared | homologous IL_7A0S_070 IL_50730.2 | |
| IL_5ZLU_121 | 1/V/1933:1934, 1/V/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_5ZLU_193 | 1/V/1933:1945, 1/V/1961:1967 | No text annotation | ||
| IL_5ZLU_122 | 1/V/1934:1945, 1/V/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_5ZLU_123 | 1/V/2050:2052, 1/V/2617:2618 | Major groove platform | homologous IL_4WF9_078 IL_48076.6 | |
| IL_5ZLU_124 | 1/V/2067:2069, 1/V/2442:2443 | Single bulged U | homologous IL_4WF9_080 IL_89505.4 | |
| IL_5ZLU_222 | 1/V/2067:2071, 1/V/2438:2443 | No text annotation | ||
| IL_5ZLU_125 | 1/V/2070:2071, 1/V/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5ZLU_126 | 1/V/2081:2083, 1/V/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5ZLU_127 | 1/V/2085:2087, 1/V/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_5ZLU_195 | 1/V/2098:2103, 1/V/2187:2191 | No text annotation | ||
| IL_5ZLU_129 | 1/V/2103:2104, 1/V/2185:2187 | No text annotation | ||
| IL_5ZLU_196 | 1/V/2105:2136, 1/V/2155:2184 | No text annotation | ||
| IL_5ZLU_130 | 1/V/2297:2299, 1/V/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_5ZLU_131 | 1/V/2347:2353, 1/V/2364:2370 | No text annotation | ||
| IL_5ZLU_132 | 1/V/2400:2403, 1/V/2414:2416 | Major groove platform with extra pair | geometric IL_3V7E_003 IL_15698.3 | |
| IL_5ZLU_133 | 1/V/2453:2454, 1/V/2498:2500 | Single stack bend | homologous IL_7A0S_083 IL_26793.1 | |
| IL_5ZLU_134 | 1/V/2454:2455, 1/V/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
| IL_5ZLU_223 | 1/V/2457:2461, 1/V/2489:2494 | No text annotation | ||
| IL_5ZLU_136 | 1/V/2466:2470, 1/V/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_17948.2 | |
| IL_5ZLU_137 | 1/V/2507:2508, 1/V/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_5ZLU_138 | 1/V/2510:2512, 1/V/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7A0S_089 IL_07785.1 | |
| IL_5ZLU_139 | 1/V/2512:2513, 1/V/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_5ZLU_140 | 1/V/2522:2523, 1/V/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_5ZLU_141 | 1/V/2591:2592, 1/V/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5ZLU_142 | 1/V/2633:2640, 1/V/2774:2785 | No text annotation | ||
| IL_5ZLU_143 | 1/V/2651:2658, 1/V/2663:2669 | No text annotation | ||
| IL_5ZLU_224 | 1/V/2680:2684, 1/V/2725:2727 | C-loop | homologous IL_9DFE_103 IL_63596.11 | |
| IL_5ZLU_145 | 1/V/2687:2691, 1/V/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_5ZLU_225 | 1/V/2695:2696, 1/V/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_5ZLU_147 | 1/V/2737:2742, 1/V/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_5ZLU_226 | 1/V/2838:2839, 1/V/2878:2880 | Major groove intercalation | homologous IL_9DFE_107 IL_61258.15 | |
| IL_5ZLU_202 | 1/V/2843:2845, 1/V/2871:2874 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_5ZLU_150 | 1/V/2847:2852, 1/V/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
| IL_5ZLU_227 | 1/X/17:18, 1/X/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.7 | |
| IL_5ZLU_152 | 1/X/23:28, 1/X/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_5ZLU_153 | 1/X/30:31, 1/X/51:54 | No text annotation | ||
| IL_5ZLU_154 | 1/X/71:79, 1/X/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5ZLU_155 | No text annotation | ||
| IL_5ZLU_156 | Isolated non-canonical cWW pair | ||
| IL_5ZLU_157 | No text annotation | ||
| IL_5ZLU_158 | No text annotation | ||
| IL_5ZLU_011 | No text annotation | ||
| IL_5ZLU_012 | Isolated cWS basepair | ||
| IL_5ZLU_013 | No text annotation | ||
| IL_5ZLU_159 | Partly complementary | ||
| IL_5ZLU_160 | No text annotation | ||
| IL_5ZLU_161 | No text annotation | ||
| IL_5ZLU_015 | No text annotation | ||
| IL_5ZLU_162 | No text annotation | ||
| IL_5ZLU_163 | No text annotation | ||
| IL_5ZLU_164 | No text annotation | ||
| IL_5ZLU_166 | No text annotation | ||
| IL_5ZLU_030 | 8-nt loop receptor | ||
| IL_5ZLU_031 | No text annotation | ||
| IL_5ZLU_036 | No text annotation | ||
| IL_5ZLU_167 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5ZLU_040 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_5ZLU_168 | No text annotation | ||
| IL_5ZLU_046 | tSH-tHW | ||
| IL_5ZLU_169 | No text annotation | ||
| IL_5ZLU_048 | Isolated non-canonical cWW pair | ||
| IL_5ZLU_170 | No text annotation | ||
| IL_5ZLU_052 | No text annotation | ||
| IL_5ZLU_054 | No text annotation | ||
| IL_5ZLU_174 | No text annotation | ||
| IL_5ZLU_064 | No text annotation | ||
| IL_5ZLU_176 | No text annotation | ||
| IL_5ZLU_177 | No text annotation | ||
| IL_5ZLU_068 | No text annotation | ||
| IL_5ZLU_178 | No text annotation | ||
| IL_5ZLU_179 | No text annotation | ||
| IL_5ZLU_181 | No text annotation | ||
| IL_5ZLU_084 | No text annotation | ||
| IL_5ZLU_088 | Isolated non-canonical cWW pair | ||
| IL_5ZLU_184 | Isolated non-canonical cWW pair | ||
| IL_5ZLU_185 | No text annotation | ||
| IL_5ZLU_105 | No text annotation | ||
| IL_5ZLU_187 | No text annotation | ||
| IL_5ZLU_189 | No text annotation | ||
| IL_5ZLU_190 | No text annotation | ||
| IL_5ZLU_191 | No text annotation | ||
| IL_5ZLU_119 | No text annotation | ||
| IL_5ZLU_192 | No text annotation | ||
| IL_5ZLU_194 | Partly complementary | ||
| IL_5ZLU_128 | No text annotation | ||
| IL_5ZLU_135 | No text annotation | ||
| IL_5ZLU_197 | No text annotation | ||
| IL_5ZLU_198 | No text annotation | ||
| IL_5ZLU_199 | No text annotation | ||
| IL_5ZLU_144 | No text annotation | ||
| IL_5ZLU_146 | No text annotation | ||
| IL_5ZLU_200 | No text annotation | ||
| IL_5ZLU_148 | Other IL | ||
| IL_5ZLU_201 | No text annotation | ||
| IL_5ZLU_149 | No text annotation | ||
| IL_5ZLU_151 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5ZLU_001 | 1/G/46:47, 1/G/361:367, 1/G/393:395 | No text annotation | homologous J3_6CZR_015 NA | |
| J3_5ZLU_002 | 1/G/586:590, 1/G/649:654, 1/G/754:755 | No text annotation | geometric J3_6CZR_059 NA | |
| J3_5ZLU_022 | 1/G/586:590, 1/G/649:658, 1/G/747:755 | No text annotation | ||
| J3_5ZLU_023 | 1/G/666:673, 1/G/717:726, 1/G/731:740 | No text annotation | ||
| J3_5ZLU_003 | 1/G/671:673, 1/G/717:725, 1/G/732:736 | No text annotation | ||
| J3_5ZLU_024 | 1/G/826:829, 1/G/857:861, 1/G/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_5ZLU_025 | 1/G/936:939, 1/G/1344:1350, 1/G/1372:1379 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
| J3_5ZLU_005 | 1/G/943:947, 1/G/1234:1237, 1/G/1337:1340 | No text annotation | ||
| J3_5ZLU_006 | 1/G/955:962, 1/G/973:984, 1/G/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_5ZLU_007 | 1/G/990:997, 1/G/1044:1047, 1/G/1210:1215 | No text annotation | geometric J3_4LFB_016 J3_76475.2 | |
| J3_5ZLU_026 | 1/G/990:997, 1/G/1044:1050, 1/G/1208:1215 | No text annotation | ||
| J3_5ZLU_027 | 1/G/997:1007, 1/G/1022:1027, 1/G/1034:1044 | No text annotation | ||
| J3_5ZLU_008 | 1/G/1002:1007, 1/G/1022:1027, 1/G/1034:1038 | No text annotation | ||
| J3_5ZLU_044 | 1/G/1061:1068, 1/G/1107:1113, 1/G/1187:1195 | No text annotation | ||
| J3_5ZLU_029 | 1/G/1073:1074, 1/G/1083:1087, 1/G/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_5ZLU_010 | 1/G/1116:1118, 1/G/1155:1158, 1/G/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_5ZLU_045 | 1/G/1116:1118, 1/G/1155:1162, 1/G/1174:1184 | No text annotation | ||
| J3_5ZLU_011 | 1/G/1237:1241, 1/G/1296:1303, 1/G/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J3_5ZLU_012 | 1/V/30:31, 1/V/474:481, 1/V/509:510 | No text annotation | homologous J3_7A0S_001 J3_60031.2 | |
| J3_5ZLU_031 | 1/V/32:37, 1/V/442:461, 1/V/468:473 | No text annotation | ||
| J3_5ZLU_013 | 1/V/56:57, 1/V/70:76, 1/V/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_5ZLU_046 | 1/V/297:303, 1/V/314:325, 1/V/337:341 | No text annotation | ||
| J3_5ZLU_014 | 1/V/683:689, 1/V/773:777, 1/V/787:794 | No text annotation | ||
| J3_5ZLU_047 | 1/V/697:707, 1/V/724:741, 1/V/756:765 | No text annotation | ||
| J3_5ZLU_015 | 1/V/698:700, 1/V/732:736, 1/V/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
| J3_5ZLU_035 | 1/V/1053:1064, 1/V/1074:1087, 1/V/1102:1107 | No text annotation | ||
| J3_5ZLU_036 | 1/V/1053:1064, 1/V/1074:1091, 1/V/1100:1107 | No text annotation | ||
| J3_5ZLU_048 | 1/V/1298:1303, 1/V/1625:1627, 1/V/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.6 | |
| J3_5ZLU_017 | 1/V/1306:1309, 1/V/1605:1611, 1/V/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5ZLU_049 | 1/V/1344:1350, 1/V/1381:1385, 1/V/1402:1403 | No text annotation | homologous J3_7A0S_018 J3_31965.2 | |
| J3_5ZLU_050 | 1/V/1437:1447, 1/V/1464:1478, 1/V/1515:1555 | No text annotation | ||
| J3_5ZLU_018 | 1/V/2090:2093, 1/V/2196:2205, 1/V/2219:2229 | No text annotation | geometric J3_4V9F_007 J3_97609.1 | |
| J3_5ZLU_051 | 1/V/2091:2096, 1/V/2193:2209, 1/V/2215:2228 | No text annotation | ||
| J3_5ZLU_019 | 1/V/2295:2297, 1/V/2321:2323, 1/V/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5ZLU_020 | 1/V/2517:2520, 1/V/2545:2547, 1/V/2561:2567 | No text annotation | ||
| J3_5ZLU_021 | 1/X/11:16, 1/X/68:70, 1/X/106:109 | No text annotation | ||
| J3_5ZLU_043 | 1/X/11:16, 1/X/68:79, 1/X/97:109 | No text annotation | ||
| J4_5ZLU_001 | 1/DD/7:10, 1/DD/26:28, 1/DD/45:50, 1/DD/66:67 | tRNA junction | homologous J4_3WFS_001 J4_36296.3 | |
| J4_5ZLU_012 | 1/G/115:122, 1/G/239:240, 1/G/286:289, 1/G/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_5ZLU_013 | 1/G/142:144, 1/G/178:183, 1/G/194:198, 1/G/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5ZLU_014 | 1/G/943:946, 1/G/1235:1241, 1/G/1296:1311, 1/G/1326:1340 | No text annotation | ||
| J4_5ZLU_015 | 1/V/1270:1276, 1/V/1294:1298, 1/V/1642:1648, 1/V/2009:2010 | No text annotation | ||
| J4_5ZLU_016 | 1/V/1309:1314, 1/V/1338:1343, 1/V/1404:1405, 1/V/1597:1605 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_5ZLU_017 | 1/V/1770:1776, 1/V/1788:1792, 1/V/1827:1830, 1/V/1975:1982 | No text annotation | ||
| J4_5ZLU_018 | 1/V/1833:1835, 1/V/1905:1906, 1/V/1924:1933, 1/V/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5ZLU_009 | 1/V/2074:2078, 1/V/2242:2285, 1/V/2383:2395, 1/V/2421:2435 | No text annotation | ||
| J4_5ZLU_019 | 1/V/2285:2289, 1/V/2343:2353, 1/V/2364:2372, 1/V/2381:2383 | No text annotation | ||
| J4_5ZLU_020 | 1/V/2643:2646, 1/V/2674:2676, 1/V/2731:2735, 1/V/2769:2771 | No text annotation | homologous J4_4WF9_009 J4_77044.4 | |
| J5_5ZLU_008 | 1/G/36:41, 1/G/401:406, 1/G/436:442, 1/G/492:502, 1/G/543:548 | No text annotation | ||
| J5_5ZLU_009 | 1/G/58:61, 1/G/106:113, 1/G/314:316, 1/G/337:339, 1/G/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_5ZLU_003 | 1/V/47:54, 1/V/116:121, 1/V/130:131, 1/V/148:151, 1/V/175:178 | No text annotation | ||
| J5_5ZLU_004 | 1/V/584:589, 1/V/668:671, 1/V/809:816, 1/V/1191:1200, 1/V/1245:1256 | No text annotation | ||
| J5_5ZLU_010 | 1/V/1674:1682, 1/V/1706:1707, 1/V/1751:1752, 1/V/1756:1764, 1/V/1988:1990 | No text annotation | homologous J5_7A0S_005 J5_62523.6 | |
| J5_5ZLU_006 | 1/V/2054:2064, 1/V/2446:2453, 1/V/2500:2506, 1/V/2583:2588, 1/V/2606:2615 | No text annotation | ||
| J5_5ZLU_011 | 1/V/2074:2077, 1/V/2243:2259, 1/V/2281:2284, 1/V/2384:2395, 1/V/2421:2435 | No text annotation | ||
| J6_5ZLU_003 | 1/G/817:821, 1/G/879:885, 1/G/912:923, 1/G/1393:1401, 1/G/1501:1507, 1/G/1528:1529 | No text annotation | ||
| J6_5ZLU_004 | 1/V/817:822, 1/V/835:836, 1/V/943:946, 1/V/971:991, 1/V/1163:1165, 1/V/1184:1190 | No text annotation | ||
| J9_5ZLU_002 | 1/V/40:46, 1/V/179:183, 1/V/214:224, 1/V/231:245, 1/V/253:270C, 1/V/270W:287, 1/V/354:375, 1/V/399:406, 1/V/421:439 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5ZLU_004 | No text annotation | ||
| J3_5ZLU_028 | No text annotation | ||
| J3_5ZLU_009 | No text annotation | ||
| J3_5ZLU_030 | No text annotation | ||
| J3_5ZLU_032 | No text annotation | ||
| J3_5ZLU_033 | No text annotation | ||
| J3_5ZLU_034 | No text annotation | ||
| J3_5ZLU_016 | No text annotation | ||
| J3_5ZLU_037 | No text annotation | ||
| J3_5ZLU_038 | No text annotation | ||
| J3_5ZLU_039 | No text annotation | ||
| J3_5ZLU_040 | No text annotation | ||
| J3_5ZLU_041 | No text annotation | ||
| J3_5ZLU_042 | No text annotation | ||
| J4_5ZLU_002 | No text annotation | ||
| J4_5ZLU_003 | No text annotation | ||
| J4_5ZLU_004 | No text annotation | ||
| J4_5ZLU_005 | No text annotation | ||
| J4_5ZLU_006 | No text annotation | ||
| J4_5ZLU_007 | No text annotation | ||
| J4_5ZLU_008 | No text annotation | ||
| J4_5ZLU_010 | No text annotation | ||
| J4_5ZLU_011 | No text annotation | ||
| J5_5ZLU_001 | No text annotation | ||
| J5_5ZLU_002 | No text annotation | ||
| J5_5ZLU_005 | No text annotation | ||
| J5_5ZLU_007 | No text annotation | ||
| J6_5ZLU_001 | No text annotation | ||
| J6_5ZLU_002 | No text annotation | ||
| J9_5ZLU_001 | No text annotation |
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