HL_5ZLU_016

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_016 not in the Motif Atlas

Geometric match to HL_1MFQ_001

Geometric discrepancy: 0.3618

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5ZLU|1|G|C|522
5ZLU|1|G|A|523
5ZLU|1|G|G|524
5ZLU|1|G|C|525
5ZLU|1|G|C|526
5ZLU|1|G|G|527

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12