HL_5ZLU_060

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGGCCCACCAGCCUAC

Length

17 nucleotides

Bulged bases

5ZLU|1|V|A|890, 5ZLU|1|V|U|895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_060 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.4276

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZLU|1|V|G|880
5ZLU|1|V|G|881
5ZLU|1|V|G|882
5ZLU|1|V|G|883
5ZLU|1|V|C|884
5ZLU|1|V|C|885
5ZLU|1|V|C|886
5ZLU|1|V|A|887
5ZLU|1|V|C|888
5ZLU|1|V|C|889
5ZLU|1|V|A|890
5ZLU|1|V|G|892
5ZLU|1|V|C|893
5ZLU|1|V|C|894
5ZLU|1|V|U|895
5ZLU|1|V|A|896
5ZLU|1|V|C|897

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain s

50S ribosomal protein L25