HL_5ZLU_085

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

5ZLU|1|V|G|2210, 5ZLU|1|V|G|2211, 5ZLU|1|V|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_085 not in the Motif Atlas

Geometric match to HL_5TBW_068

Geometric discrepancy: 0.3654

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

5ZLU|1|V|C|2209
5ZLU|1|V|G|2210
5ZLU|1|V|G|2211
5ZLU|1|V|A|2212
5ZLU|1|V|U|2213
5ZLU|1|V|G|2215

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L2

Chain w

50S ribosomal protein L31