HL_5ZLU_103

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_103 not in the Motif Atlas

Homologous match to HL_4V9F_072

Geometric discrepancy: 0.2995

The information below is about HL_4V9F_072

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5ZLU|1|X|G|86
5ZLU|1|X|G|87
5ZLU|1|X|C|88
5ZLU|1|X|G|89
5ZLU|1|X|A|89|||A
5ZLU|1|X|C|90

Current chains

Chain X

5S ribosomal RNA

Nearby chains

Chain V

Large subunit ribosomal RNA; LSU rRNA

Chain j

50S ribosomal protein L16

Chain s

50S ribosomal protein L25