HL_5ZLU_112

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGCGGGAAGCCG

Length

13 nucleotides

Bulged bases

5ZLU|1|V|C|137, 5ZLU|1|V|G|137|||A, 5ZLU|1|V|G|139, 5ZLU|1|V|A|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_112 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1953

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5ZLU|1|V|C|134
5ZLU|1|V|G|135
5ZLU|1|V|G|136
5ZLU|1|V|C|137
5ZLU|1|V|G|137|||A
5ZLU|1|V|G|138
5ZLU|1|V|G|139
5ZLU|1|V|A|140
5ZLU|1|V|A|141
5ZLU|1|V|G|142
5ZLU|1|V|C|143
5ZLU|1|V|C|144
5ZLU|1|V|G|145

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L23

Chain u

50S ribosomal protein L29