HL_6AWC_008

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

6AWC|1|A|C|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWC_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.3354

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6AWC|1|A|A|320
6AWC|1|A|A|321
6AWC|1|A|C|322
6AWC|1|A|U|323
6AWC|1|A|G|324
6AWC|1|A|A|325
6AWC|1|A|G|326
6AWC|1|A|A|327
6AWC|1|A|C|328
6AWC|1|A|A|329
6AWC|1|A|C|330
6AWC|1|A|G|331
6AWC|1|A|G|332
6AWC|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16

Chain W

30S ribosomal protein S20