6AWC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6AWC_001 | No text annotation | ||
| HL_6AWC_002 | No text annotation | ||
| HL_6AWC_003 | No text annotation | ||
| HL_6AWC_004 | GNRA | ||
| HL_6AWC_005 | Mini UNCG | ||
| HL_6AWC_006 | GNRA related | ||
| HL_6AWC_007 | GNRA | ||
| HL_6AWC_008 | No text annotation | ||
| HL_6AWC_009 | UNCG | ||
| HL_6AWC_010 | GNRA | ||
| HL_6AWC_011 | No text annotation | ||
| HL_6AWC_012 | GNRA wlth extra near cWW | ||
| HL_6AWC_013 | GNRA variation | ||
| HL_6AWC_014 | GNRA-like with tWH | ||
| HL_6AWC_015 | No text annotation | ||
| HL_6AWC_016 | GNRA | ||
| HL_6AWC_017 | No text annotation | ||
| HL_6AWC_018 | Externally structured | ||
| HL_6AWC_019 | GNRA | ||
| HL_6AWC_020 | GNRA | ||
| HL_6AWC_021 | No text annotation | ||
| HL_6AWC_022 | GNRA | ||
| HL_6AWC_023 | No text annotation | ||
| HL_6AWC_024 | T-loop related | ||
| HL_6AWC_025 | No text annotation | ||
| HL_6AWC_026 | GNRA | ||
| HL_6AWC_027 | No text annotation | ||
| HL_6AWC_028 | T-loop with 3 stacked bulged bases | ||
| HL_6AWC_029 | No text annotation | ||
| HL_6AWC_030 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6AWC_001 | Single bulged G | ||
| IL_6AWC_002 | Single bulged A | ||
| IL_6AWC_003 | No text annotation | ||
| IL_6AWC_004 | Minor groove platform | ||
| IL_6AWC_005 | Multiple bulged bases | ||
| IL_6AWC_006 | Minor groove platform with extra cWW | ||
| IL_6AWC_007 | Minor groove platform | ||
| IL_6AWC_008 | No text annotation | ||
| IL_6AWC_009 | Isolated non-canonical cWW pair | ||
| IL_6AWC_010 | Minor groove platform related | ||
| IL_6AWC_011 | No text annotation | ||
| IL_6AWC_012 | tWH-tWH-tHW-tHW | ||
| IL_6AWC_013 | Minor groove platform | ||
| IL_6AWC_014 | Kink-turn with non-sequential stacking | ||
| IL_6AWC_058 | No text annotation | ||
| IL_6AWC_015 | No text annotation | ||
| IL_6AWC_016 | C-loop | ||
| IL_6AWC_017 | Single bulged U | ||
| IL_6AWC_018 | C-loop | ||
| IL_6AWC_019 | Single bulged G | ||
| IL_6AWC_020 | No text annotation | ||
| IL_6AWC_021 | No text annotation | ||
| IL_6AWC_022 | tSH-tHW-tWW | ||
| IL_6AWC_023 | No text annotation | ||
| IL_6AWC_024 | SSU/LSU pseudoknot | ||
| IL_6AWC_025 | Isolated cWH basepair | ||
| IL_6AWC_026 | Kink-turn related | ||
| IL_6AWC_027 | No text annotation | ||
| IL_6AWC_028 | tSH-tHW-tHS | ||
| IL_6AWC_029 | Major groove platform | ||
| IL_6AWC_030 | Major groove minor groove platform; mini C-loop | ||
| IL_6AWC_031 | No text annotation | ||
| IL_6AWC_032 | Major groove platform; stack outside cWW | ||
| IL_6AWC_033 | Single stack bend | ||
| IL_6AWC_034 | Tandem non-canonical cWW pairs | ||
| IL_6AWC_035 | Kink-turn | ||
| IL_6AWC_036 | Left turn | ||
| IL_6AWC_037 | tSH-tHW-tHS | ||
| IL_6AWC_059 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6AWC_038 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_6AWC_039 | Single bulged A | ||
| IL_6AWC_040 | Single bulged G | ||
| IL_6AWC_041 | Minor groove platform | ||
| IL_6AWC_042 | No text annotation | ||
| IL_6AWC_043 | Minor groove platform | ||
| IL_6AWC_044 | Single stack bend | ||
| IL_6AWC_045 | No text annotation | ||
| IL_6AWC_046 | Single bulged U | ||
| IL_6AWC_047 | No text annotation | ||
| IL_6AWC_048 | Minor groove platform | ||
| IL_6AWC_049 | Single bulged U | ||
| IL_6AWC_050 | Isolated non-canonical cWW pair | ||
| IL_6AWC_051 | No text annotation | ||
| IL_6AWC_052 | Minor groove platform | ||
| IL_6AWC_053 | No text annotation | ||
| IL_6AWC_054 | No text annotation | ||
| IL_6AWC_055 | 180 degree turn | ||
| IL_6AWC_056 | Double sheared with non-canonical cWW | ||
| IL_6AWC_057 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6AWC_001 | No text annotation | ||
| J3_6AWC_002 | No text annotation | ||
| J3_6AWC_003 | No text annotation | ||
| J3_6AWC_004 | No text annotation | ||
| J3_6AWC_005 | No text annotation | ||
| J3_6AWC_006 | No text annotation | ||
| J3_6AWC_007 | No text annotation | ||
| J3_6AWC_008 | No text annotation | ||
| J3_6AWC_009 | No text annotation | ||
| J3_6AWC_010 | No text annotation | ||
| J3_6AWC_011 | No text annotation | ||
| J3_6AWC_012 | No text annotation | ||
| J3_6AWC_013 | No text annotation | ||
| J3_6AWC_014 | No text annotation | ||
| J3_6AWC_016 | No text annotation | ||
| J3_6AWC_017 | No text annotation | ||
| J3_6AWC_015 | No text annotation | ||
| J4_6AWC_001 | No text annotation | ||
| J4_6AWC_002 | No text annotation | ||
| J4_6AWC_003 | No text annotation | ||
| J5_6AWC_001 | No text annotation | ||
| J5_6AWC_002 | No text annotation |
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