HL_6AWC_016

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWC_016 not in the Motif Atlas

Homologous match to HL_6CZR_087

Geometric discrepancy: 0.2753

The information below is about HL_6CZR_087

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6AWC|1|A|C|726
6AWC|1|A|G|727
6AWC|1|A|A|728
6AWC|1|A|A|729
6AWC|1|A|G|730
6AWC|1|A|G|731

Current chains

Chain A

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S15

Chain U

30S ribosomal protein S18

Chain X

30S ribosomal protein S21