HL_6AWD_006

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6AWD|1|A|A|262, 6AWD|1|A|A|263, 6AWD|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2611

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6AWD|1|A|G|259
6AWD|1|A|G|260
6AWD|1|A|U|261
6AWD|1|A|A|262
6AWD|1|A|A|263
6AWD|1|A|C|264
6AWD|1|A|G|265
6AWD|1|A|G|266
6AWD|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S17

Chain W

30S ribosomal protein S20