6AWD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6AWD_001 | No text annotation | ||
| HL_6AWD_032 | No text annotation | ||
| HL_6AWD_002 | No text annotation | ||
| HL_6AWD_033 | No text annotation | ||
| HL_6AWD_003 | GNRA | ||
| HL_6AWD_004 | GNRA | ||
| HL_6AWD_005 | No text annotation | ||
| HL_6AWD_006 | GNRA related | ||
| HL_6AWD_007 | GNRA | ||
| HL_6AWD_008 | No text annotation | ||
| HL_6AWD_009 | UNCG | ||
| HL_6AWD_010 | GNRA | ||
| HL_6AWD_011 | UNCG | ||
| HL_6AWD_012 | GNRA wlth extra near cWW | ||
| HL_6AWD_013 | GNRA related | ||
| HL_6AWD_014 | No text annotation | ||
| HL_6AWD_015 | No text annotation | ||
| HL_6AWD_016 | GNRA | ||
| HL_6AWD_017 | No text annotation | ||
| HL_6AWD_018 | Externally structured | ||
| HL_6AWD_019 | GNRA | ||
| HL_6AWD_020 | GNRA | ||
| HL_6AWD_021 | No text annotation | ||
| HL_6AWD_022 | GNRA | ||
| HL_6AWD_023 | GNRA | ||
| HL_6AWD_024 | T-loop related | ||
| HL_6AWD_025 | No text annotation | ||
| HL_6AWD_026 | GNRA | ||
| HL_6AWD_027 | No text annotation | ||
| HL_6AWD_028 | T-loop with 3 stacked bulged bases | ||
| HL_6AWD_029 | No text annotation | ||
| HL_6AWD_030 | No text annotation | ||
| HL_6AWD_031 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6AWD_001 | Single bulged G | ||
| IL_6AWD_002 | Single bulged A | ||
| IL_6AWD_003 | No text annotation | ||
| IL_6AWD_004 | Minor groove platform | ||
| IL_6AWD_005 | Multiple bulged bases | ||
| IL_6AWD_006 | Minor groove platform with extra cWW | ||
| IL_6AWD_007 | Minor groove platform | ||
| IL_6AWD_008 | No text annotation | ||
| IL_6AWD_009 | Isolated non-canonical cWW pair | ||
| IL_6AWD_010 | Minor groove platform related | ||
| IL_6AWD_011 | Isolated cWH basepair | ||
| IL_6AWD_012 | tWH-tWH-tHW-tHW | ||
| IL_6AWD_013 | Minor groove platform | ||
| IL_6AWD_014 | Kink-turn with non-sequential stacking | ||
| IL_6AWD_015 | No text annotation | ||
| IL_6AWD_066 | No text annotation | ||
| IL_6AWD_067 | C-loop | ||
| IL_6AWD_016 | No text annotation | ||
| IL_6AWD_017 | Single bulged U | ||
| IL_6AWD_018 | C-loop | ||
| IL_6AWD_068 | Single bulged G | ||
| IL_6AWD_019 | Single bulged G, near cWW | ||
| IL_6AWD_020 | No text annotation | ||
| IL_6AWD_021 | No text annotation | ||
| IL_6AWD_022 | tSH-tHW-tWW | ||
| IL_6AWD_023 | No text annotation | ||
| IL_6AWD_024 | SSU/LSU pseudoknot | ||
| IL_6AWD_069 | Isolated tWW contact | ||
| IL_6AWD_025 | Kink-turn related | ||
| IL_6AWD_026 | No text annotation | ||
| IL_6AWD_027 | tSH-tHW-tHS | ||
| IL_6AWD_028 | No text annotation | ||
| IL_6AWD_070 | Major groove platform | ||
| IL_6AWD_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6AWD_030 | No text annotation | ||
| IL_6AWD_071 | Major groove platform; stack outside cWW | ||
| IL_6AWD_031 | No text annotation | ||
| IL_6AWD_032 | Single stack bend | ||
| IL_6AWD_072 | Tandem non-canonical cWW pairs | ||
| IL_6AWD_033 | No text annotation | ||
| IL_6AWD_034 | Kink-turn | ||
| IL_6AWD_073 | Left turn | ||
| IL_6AWD_035 | No text annotation | ||
| IL_6AWD_036 | tSH-tHW-tHS | ||
| IL_6AWD_078 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6AWD_074 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_6AWD_037 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_6AWD_075 | Single bulged A | ||
| IL_6AWD_038 | Isolated non-canonical cWW pair | ||
| IL_6AWD_039 | Single bulged G | ||
| IL_6AWD_040 | Minor groove platform | ||
| IL_6AWD_041 | No text annotation | ||
| IL_6AWD_042 | Minor groove platform | ||
| IL_6AWD_043 | Single stack bend | ||
| IL_6AWD_044 | No text annotation | ||
| IL_6AWD_045 | Single bulged U | ||
| IL_6AWD_046 | No text annotation | ||
| IL_6AWD_047 | Minor groove platform | ||
| IL_6AWD_048 | Single bulged A | ||
| IL_6AWD_049 | Isolated non-canonical cWW pair | ||
| IL_6AWD_050 | No text annotation | ||
| IL_6AWD_051 | Minor groove platform | ||
| IL_6AWD_052 | No text annotation | ||
| IL_6AWD_053 | No text annotation | ||
| IL_6AWD_076 | No text annotation | ||
| IL_6AWD_054 | 180 degree turn | ||
| IL_6AWD_055 | Double sheared with non-canonical cWW | ||
| IL_6AWD_056 | No text annotation | ||
| IL_6AWD_057 | No text annotation | ||
| IL_6AWD_058 | No text annotation | ||
| IL_6AWD_059 | Isolated non-canonical cWW pair | ||
| IL_6AWD_060 | Other IL | ||
| IL_6AWD_061 | Isolated non-canonical cWW pair | ||
| IL_6AWD_062 | Double sheared | ||
| IL_6AWD_063 | Triple sheared related | ||
| IL_6AWD_064 | Isolated non-canonical cWW with bulges | ||
| IL_6AWD_077 | No text annotation | ||
| IL_6AWD_065 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6AWD_001 | No text annotation | ||
| J3_6AWD_002 | No text annotation | ||
| J3_6AWD_012 | No text annotation | ||
| J3_6AWD_013 | No text annotation | ||
| J3_6AWD_003 | No text annotation | ||
| J3_6AWD_004 | No text annotation | ||
| J3_6AWD_005 | No text annotation | ||
| J3_6AWD_006 | No text annotation | ||
| J3_6AWD_014 | No text annotation | ||
| J3_6AWD_007 | No text annotation | ||
| J3_6AWD_008 | No text annotation | ||
| J3_6AWD_009 | No text annotation | ||
| J3_6AWD_010 | No text annotation | ||
| J3_6AWD_015 | No text annotation | ||
| J3_6AWD_016 | No text annotation | ||
| J3_6AWD_011 | No text annotation | ||
| J4_6AWD_001 | No text annotation | ||
| J4_6AWD_002 | No text annotation | ||
| J4_6AWD_003 | No text annotation | ||
| J5_6AWD_001 | No text annotation | ||
| J5_6AWD_002 | No text annotation |
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