HL_6AWD_008

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

6AWD|1|A|C|328, 6AWD|1|A|C|330, 6AWD|1|A|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.3612

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6AWD|1|A|A|320
6AWD|1|A|A|321
6AWD|1|A|C|322
6AWD|1|A|U|323
6AWD|1|A|G|324
6AWD|1|A|A|325
6AWD|1|A|G|326
6AWD|1|A|A|327
6AWD|1|A|C|328
6AWD|1|A|A|329
6AWD|1|A|C|330
6AWD|1|A|G|331
6AWD|1|A|G|332
6AWD|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16

Chain W

30S ribosomal protein S20