HL_6AWD_012

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6AWD|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3003

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6AWD|1|A|G|462
6AWD|1|A|U|463
6AWD|1|A|U|464
6AWD|1|A|A|465
6AWD|1|A|A|466
6AWD|1|A|U|467
6AWD|1|A|A|468
6AWD|1|A|C|469
6AWD|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains