HL_6AWD_023

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_023 not in the Motif Atlas

Homologous match to HL_6CZR_095

Geometric discrepancy: 0.4322

The information below is about HL_6CZR_095

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6AWD|1|A|U|1076
6AWD|1|A|G|1077
6AWD|1|A|U|1078
6AWD|1|A|G|1079
6AWD|1|A|A|1080
6AWD|1|A|A|1081

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S2

Chain H

30S ribosomal protein S5