3D structure

PDB id
6AWD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex
Experimental method
ELECTRON MICROSCOPY
Resolution
8.1 Å

Loop

Sequence
UGUGAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6AWD_023 not in the Motif Atlas
Homologous match to HL_6CZR_095
Geometric discrepancy: 0.4322
The information below is about HL_6CZR_095
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.6
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6AWD|1|A|U|1076
6AWD|1|A|G|1077
6AWD|1|A|U|1078
6AWD|1|A|G|1079
6AWD|1|A|A|1080
6AWD|1|A|A|1081

Current chains

Chain A
16S rRNA

Nearby chains

Chain E
30S ribosomal protein S2
Chain H
30S ribosomal protein S5

Coloring options:


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