HL_6AWD_026

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

6AWD|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_026 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2866

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6AWD|1|A|U|1165
6AWD|1|A|G|1166
6AWD|1|A|A|1167
6AWD|1|A|U|1168
6AWD|1|A|A|1169
6AWD|1|A|A|1170
6AWD|1|A|A|1171

Current chains

Chain A

16S rRNA

Nearby chains

Chain 04

DNA-directed RNA polymerase subunit beta'

Chain E

30S ribosomal protein S2

Chain X

30S ribosomal protein S21