HL_6AWD_027

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

6AWD|1|A|C|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_027 not in the Motif Atlas

Homologous match to HL_6CZR_099

Geometric discrepancy: 0.2056

The information below is about HL_6CZR_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AWD|1|A|C|1265
6AWD|1|A|G|1266
6AWD|1|A|C|1267
6AWD|1|A|G|1268
6AWD|1|A|A|1269
6AWD|1|A|G|1270

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S13

Chain Q

30S ribosomal protein S14